3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08405

Details:

PFam ID : PF08405

PFam Domain Description : Viral polyprotein N-terminal

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 14

Average sequence length: 323.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08405	B8XW77_9CALI_127_484	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08405	B8XW77_9CALI_127_484	100

Sequence based PCA Plot of the family - PF08405 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=11
Motif2 Start=84 Length=8
Motif3 Start=166 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay