3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08404

Details:

PFam ID : PF08404

PFam Domain Description : Baculoviridae P74 N-terminal

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 46

Average sequence length: 281.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08404	D0V7S3_9VIRU_1_123	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08404	B9W4A8_9HYME_1_311	100

Sequence based PCA Plot of the family - PF08404 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=205 Length=8
Motif3 Start=190 Length=8
Motif4 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay