3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08403

Details:

PFam ID : PF08403

PFam Domain Description : Amino acid permease N-terminal

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 54

Average sequence length: 67.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08403	A9QPU6_STRPU_76_148	95

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08403	A9QPU6_STRPU_76_148	100

Sequence based PCA Plot of the family - PF08403 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay