3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08401

Details:

PFam ID : PF08401

PFam Domain Description : Domain of unknown function (DUF1738)

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 375

Average sequence length: 120.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08401	B6XBT7_9ENTR_3_69	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08401	D6PF71_9VIRU_2_133	100

Sequence based PCA Plot of the family - PF08401 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=106 Length=8
Motif2 Start=43 Length=8
Motif3 Start=14 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay