3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08397

Details:

PFam ID : PF08397

PFam Domain Description : IRSp53/MIM homology domain

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 116

Average sequence length: 165.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08397	F2U5F5_9EUKA_13_222	53.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08397	F1NBU7_CHICK_16_226	98.2

Sequence based PCA Plot of the family - PF08397 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay