3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08395

Details:

PFam ID : PF08395

PFam Domain Description : 7tm Chemosensory receptor

Number of Sequence in 50% Dataset : 519

Number of Sequence in Full Dataset : 990

Average sequence length: 323.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08395	B3TBF6_9ARCH_99_135	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08395	Q7PF19_ANOGA_20_402	99.6

Sequence based PCA Plot of the family - PF08395 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=259 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay