3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08393

Details:

PFam ID : PF08393

PFam Domain Description : Dynein heavy chain, N-terminal region 2

Number of Sequence in 50% Dataset : 350

Number of Sequence in Full Dataset : 878

Average sequence length: 340.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08393	E1F8I7_GIAIA_54_351	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08393	C6LZL4_GIAIB_1587_1645	100

Sequence based PCA Plot of the family - PF08393 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=452 Length=8
Motif3 Start=253 Length=8
Motif4 Start=441 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay