3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08392

Details:

PFam ID : PF08392

PFam Domain Description : FAE1/Type III polyketide synthase-like protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 302

Average sequence length: 238.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08392	E1F8I7_GIAIA_54_351	28.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08392	C5Z821_SORBI_75_142	99.3

Sequence based PCA Plot of the family - PF08392 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=248 Length=8
Motif3 Start=278 Length=8
Motif4 Start=4 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay