3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08391

Details:

PFam ID : PF08391

PFam Domain Description : Ly49-like protein, N-terminal region

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 68

Average sequence length: 109.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08391	A7DY55_CHICK_116_178	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08391	Q8R4N9_MOUSE_1_70	91.0

Sequence based PCA Plot of the family - PF08391 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=110 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay