3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08389

Details:

PFam ID : PF08389

PFam Domain Description : Exportin 1-like protein

Number of Sequence in 50% Dataset : 210

Number of Sequence in Full Dataset : 554

Average sequence length: 144.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08389	E9C0L3_9EUKA_195_394	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08389	B0D7W3_LACBS_114_262	99.2

Sequence based PCA Plot of the family - PF08389 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay