3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08388

Details:

PFam ID : PF08388

PFam Domain Description : Group II intron, maturase-specific domain

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 813

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08388	Q4E6I2_9RICK_224_270	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08388	Q32RV9_STAPU_299_394	100

Sequence based PCA Plot of the family - PF08388 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=12 Length=17
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay