3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08387

Details:

PFam ID : PF08387

PFam Domain Description : FBD

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 362

Average sequence length: 49.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08387	A5BHT0_VITVI_1697_1745	60.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08387	D7L366_ARALL_366_416	100

Sequence based PCA Plot of the family - PF08387 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=38 Length=18
Motif2 Start=9 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay