3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08386

Details:

PFam ID : PF08386

PFam Domain Description : TAP-like protein

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 518

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08386	COLI_SHEEP_1_20	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08386	A7F6N4_SCLS1_352_484	100

Sequence based PCA Plot of the family - PF08386 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=18
Motif3 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay