3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08385

Details:

PFam ID : PF08385

PFam Domain Description : Dynein heavy chain, N-terminal region 1

Number of Sequence in 50% Dataset : 287

Number of Sequence in Full Dataset : 546

Average sequence length: 418.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08385	COLI_SHEEP_1_20	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08385	C5KQ91_9ALVE_1_262	99.6

Sequence based PCA Plot of the family - PF08385 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay