3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08381

Details:

PFam ID : PF08381

PFam Domain Description : Transcription factor regulating root and shoot growth via Pin3

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 104

Average sequence length: 54.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08381	Q4RQT6_TETNG_281_535	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08381	E1ZKY0_9CHLO_1253_1309	99.0

Sequence based PCA Plot of the family - PF08381 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay