3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08379

Details:

PFam ID : PF08379

PFam Domain Description : Bacterial transglutaminase-like N-terminal region

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 625

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08379	Q4RQT6_TETNG_281_535	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08379	A6GT41_9BURK_6_96	100

Sequence based PCA Plot of the family - PF08379 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=76 Length=8
Motif3 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay