3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08378

Details:

PFam ID : PF08378

PFam Domain Description : Nuclease-related domain

Number of Sequence in 50% Dataset : 325

Number of Sequence in Full Dataset : 750

Average sequence length: 119.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08378	Q4RQT6_TETNG_281_535	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08378	A1SXM5_PSYIN_539_655	99.8

Sequence based PCA Plot of the family - PF08378 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay