3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08377

Details:

PFam ID : PF08377

PFam Domain Description : MAP2/Tau projection domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 15

Average sequence length: 361

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08377	Q4RQT6_TETNG_281_535	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08377	F1QJK5_DANRE_1_151	100

Sequence based PCA Plot of the family - PF08377 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay