3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08376

Details:

PFam ID : PF08376

PFam Domain Description : Nitrate and nitrite sensing

Number of Sequence in 50% Dataset : 308

Number of Sequence in Full Dataset : 542

Average sequence length: 240.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08376	B7PPD5_IXOSC_170_197	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08376	B3S683_TRIAD_167_329	100

Sequence based PCA Plot of the family - PF08376 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=20
Motif2 Start=91 Length=8
Motif3 Start=126 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay