3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08366

Details:

PFam ID : PF08366

PFam Domain Description : LLGL2

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 69

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08366	B3RXQ4_TRIAD_220_334	31.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08366	D0ABA2_9NEOP_258_396	100

Sequence based PCA Plot of the family - PF08366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=6 Length=17
Motif2 Start=62 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay