3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08364

Details:

PFam ID : PF08364

PFam Domain Description : Bacterial translation initiation factor IF-2 associated region

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 236

Average sequence length: 41.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08364	C2E4H4_LACJO_347_597	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08364	B6IVF6_RHOCS_44_75	96.1

Sequence based PCA Plot of the family - PF08364 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay