3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08362

Details:

PFam ID : PF08362

PFam Domain Description : YcdC-like protein, C-terminal region

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 213

Average sequence length: 137.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08362	B9P8G2_POPTR_1_108	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08362	C7JQG2_ACEPA_70_213	100

Sequence based PCA Plot of the family - PF08362 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=29 Length=8
Motif3 Start=41 Length=14
Motif4 Start=101 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay