3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08361

Details:

PFam ID : PF08361

PFam Domain Description : MAATS-type transcriptional repressor, C-terminal region

Number of Sequence in 50% Dataset : 69

Number of Sequence in Full Dataset : 189

Average sequence length: 117

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08361	C6C209_DESAD_83_203	42.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08361	C1D4W4_LARHH_82_204	100

Sequence based PCA Plot of the family - PF08361 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=95 Length=8
Motif3 Start=1 Length=8
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay