3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08358

Details:

PFam ID : PF08358

PFam Domain Description : Flagellar hook capping protein - N-terminal region

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 45

Average sequence length: 49.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08358	B7SL44_9VIRU_50_99	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08358	D9I8A9_9VIRU_51_102	100

Sequence based PCA Plot of the family - PF08358 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay