3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08355

Details:

PFam ID : PF08355

PFam Domain Description : EF hand associated

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 110

Average sequence length: 73.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08355	C4QAZ5_SCHMA_347_488	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08355	A9UVP4_MONBE_346_424	100

Sequence based PCA Plot of the family - PF08355 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay