3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08354

Details:

PFam ID : PF08354

PFam Domain Description : Domain of unknown function (DUF1729)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 106

Average sequence length: 55.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08354	A4UUD8_THELA_1031_1068	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08354	A4UUD8_THELA_1031_1068	98.0

Sequence based PCA Plot of the family - PF08354 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay