3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08353

Details:

PFam ID : PF08353

PFam Domain Description : Domain of unknown function (DUF1727)

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 287

Average sequence length: 108.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08353	A7VER4_9CLOT_324_443	96

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08353	D3R1Y4_CLOB3_365_490	100

Sequence based PCA Plot of the family - PF08353 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=71 Length=8
Motif2 Start=112 Length=8
Motif3 Start=3 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay