3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08352

Details:

PFam ID : PF08352

PFam Domain Description : Oligopeptide/dipeptide transporter, C-terminal region

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 8482

Average sequence length: 55.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08352	A7BLT2_9GAMM_112_164	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08352	B7VT15_VIBSL_226_278	99.9

Sequence based PCA Plot of the family - PF08352 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=23
Motif2 Start=36 Length=8
Motif3 Start=91 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay