3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08350

Details:

PFam ID : PF08350

PFam Domain Description : Domain of unknown function (DUF1724)

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 106

Average sequence length: 62.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08350	E4NSN7_HALBP_195_257	97.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08350	Q8TMZ5_METAC_195_259	100

Sequence based PCA Plot of the family - PF08350 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=8
Motif4 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay