3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08348

Details:

PFam ID : PF08348

PFam Domain Description : YheO-like PAS domain

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 345

Average sequence length: 116.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08348	E9GS74_DAPPU_1_111	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08348	Q1IBX3_PSEE4_14_140	100

Sequence based PCA Plot of the family - PF08348 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=88 Length=8
Motif2 Start=33 Length=17
Motif3 Start=20 Length=8
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay