3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08347

Details:

PFam ID : PF08347

PFam Domain Description : N-terminal CTNNB1 binding

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 80

Average sequence length: 150.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08347	E9GS74_DAPPU_1_111	32.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08347	Q4RS34_TETNG_1_252	100

Sequence based PCA Plot of the family - PF08347 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=1 Length=8
Motif3 Start=16 Length=8
Motif4 Start=195 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay