3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08346

Details:

PFam ID : PF08346

PFam Domain Description : AntA/AntB antirepressor

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 225

Average sequence length: 69.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08346	E0VR36_PEDHC_546_609	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08346	A4SRW3_AERS4_20_107	100

Sequence based PCA Plot of the family - PF08346 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=53 Length=14
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay