3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08345

Details:

PFam ID : PF08345

PFam Domain Description : Flagellar M-ring protein C-terminal

Number of Sequence in 50% Dataset : 193

Number of Sequence in Full Dataset : 682

Average sequence length: 164.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08345	E0VR36_PEDHC_546_609	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08345	C1A563_GEMAT_246_307	100

Sequence based PCA Plot of the family - PF08345 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=179 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay