3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08340

Details:

PFam ID : PF08340

PFam Domain Description : Domain of unknown function (DUF1732)

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 562

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08340	B0VHG5_CLOAI_206_291	14.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08340	B0VHG5_CLOAI_206_291	100

Sequence based PCA Plot of the family - PF08340 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=37 Length=26
Motif2 Start=12 Length=8
Motif3 Start=71 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay