3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08338

Details:

PFam ID : PF08338

PFam Domain Description : Domain of unknown function (DUF1731)

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 721

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08338	D2I532_AILME_444_655	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08338	E4DMF8_PROAC_246_295	100

Sequence based PCA Plot of the family - PF08338 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay