3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08335

Details:

PFam ID : PF08335

PFam Domain Description : GlnD PII-uridylyltransferase

Number of Sequence in 50% Dataset : 149

Number of Sequence in Full Dataset : 1586

Average sequence length: 135.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08335	C8NCH0_9GAMM_261_426	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08335	C8NCH0_9GAMM_261_426	100

Sequence based PCA Plot of the family - PF08335 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=103 Length=14
Motif2 Start=26 Length=8
Motif3 Start=46 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay