3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08334

Details:

PFam ID : PF08334

PFam Domain Description : Type II secretion system (T2SS), protein G

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 535

Average sequence length: 102.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08334	Q6ZQF4_MOUSE_41_56	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08334	E4TEK3_CALNY_29_113	99.8

Sequence based PCA Plot of the family - PF08334 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=88 Length=8
Motif3 Start=25 Length=11
Motif4 Start=109 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay