3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08332

Details:

PFam ID : PF08332

PFam Domain Description : Calcium/calmodulin dependent protein kinase II Association

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 147

Average sequence length: 114.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08332	E5S167_TRISP_77_168	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08332	Q72J96_THET2_3_128	95.8

Sequence based PCA Plot of the family - PF08332 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=37 Length=8
Motif3 Start=100 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay