3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08331

Details:

PFam ID : PF08331

PFam Domain Description : Domain of unknown function (DUF1730)

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 622

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08331	E7M4U7_9BACL_37_105	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08331	D0LI60_HALO1_67_162	99.8

Sequence based PCA Plot of the family - PF08331 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=8 Length=17
Motif2 Start=75 Length=8
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay