3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08329

Details:

PFam ID : PF08329

PFam Domain Description : Chitinase A, N-terminal domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 126

Average sequence length: 121.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08329	E7M4U7_9BACL_37_105	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08329	Q9RQJ3_AERHY_23_134	100

Sequence based PCA Plot of the family - PF08329 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay