3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08328

Details:

PFam ID : PF08328

PFam Domain Description : Adenylosuccinate lyase C-terminal

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 363

Average sequence length: 114.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08328	O49514_ARATH_394_449	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08328	F0QV09_VULM7_322_433	100

Sequence based PCA Plot of the family - PF08328 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=11
Motif2 Start=58 Length=8
Motif3 Start=114 Length=8
Motif4 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay