3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08327

Details:

PFam ID : PF08327

PFam Domain Description : Activator of Hsp90 ATPase homolog 1-like protein

Number of Sequence in 50% Dataset : 513

Number of Sequence in Full Dataset : 1770

Average sequence length: 127.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08327	F0V8G9_NEOCA_974_1053	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08327	C7R8C0_KANKD_37_171	99.7

Sequence based PCA Plot of the family - PF08327 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=65 Length=8
Motif3 Start=172 Length=8
Motif4 Start=1 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay