3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08325

Details:

PFam ID : PF08325

PFam Domain Description : WLM domain

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 204

Average sequence length: 190.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08325	E2L7D7_MONPE_1_118	96.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08325	E3KNS2_PUCGT_145_249	100

Sequence based PCA Plot of the family - PF08325 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay