3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08318

Details:

PFam ID : PF08318

PFam Domain Description : COG4 transport protein

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 157

Average sequence length: 277.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08318	Q4RMD6_TETNG_1_47	63.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08318	E7R5V3_PICAD_210_556	100

Sequence based PCA Plot of the family - PF08318 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay