3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08315

Details:

PFam ID : PF08315

PFam Domain Description : cwf18 pre-mRNA splicing factor

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 132

Average sequence length: 130.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08315	A2DZ95_TRIVA_1_95	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08315	F2U782_9EUKA_1_177	100

Sequence based PCA Plot of the family - PF08315 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=100 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay