3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08312

Details:

PFam ID : PF08312

PFam Domain Description : cwf21 domain

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 168

Average sequence length: 49.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08312	E2M2T8_MONPE_1_62	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08312	D7FSA5_ECTSI_970_1017	100

Sequence based PCA Plot of the family - PF08312 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay