3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08311

Details:

PFam ID : PF08311

PFam Domain Description : Mad3/BUB1 homology region 1

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 175

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08311	E2M2T8_MONPE_1_62	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08311	E3L1Q8_PUCGT_92_231	100

Sequence based PCA Plot of the family - PF08311 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=4 Length=8
Motif3 Start=61 Length=8
Motif4 Start=21 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay