3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08310

Details:

PFam ID : PF08310

PFam Domain Description : LGFP repeat

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 518

Average sequence length: 51.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08310	C1A4M8_GEMAT_449_496	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08310	A6WCF3_KINRD_305_356	100

Sequence based PCA Plot of the family - PF08310 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=28 Length=8
Motif3 Start=50 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay