3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08309

Details:

PFam ID : PF08309

PFam Domain Description : LVIVD repeat

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 335

Average sequence length: 40.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08309	C1A4M8_GEMAT_449_496	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08309	B5WB25_9BURK_23_64	99.7

Sequence based PCA Plot of the family - PF08309 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=11 Length=8
Motif2 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay