3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08307

Details:

PFam ID : PF08307

PFam Domain Description : Glycosyl hydrolase family 98 C-terminal domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 22

Average sequence length: 165.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08307	F0Z2T5_9CLOT_1311_1556	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08307	A7B6A6_RUMGN_592_877	90.4

Sequence based PCA Plot of the family - PF08307 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay